miRBase entry: gga-mir-96

Stem-loop gga-mir-96


Accession
MI0029336
Description
Gallus gallus gga-mir-96 precursor miRNA

Literature search
6 open access papers mention gga-mir-96
(45 sentences)

Sequence

437 reads, 6 reads per million, 5 experiments
ggcccgcuUUGGCACUAGCACAUUUUUGCUuugcuuuauguguuuugagCAAUUAUGUGUAGUGCCAAUAUgggagaaggcggaga
..((((..(((((((((.(((((..((((((.((.......))...))))))..))))))))))))))..))))............

Structure
----------gg    cu         G     UU      --u  uu 
            cccg  UUGGCACUA CACAU  UUGCUu   gc  u
            ||||  ||||||||| |||||  ||||||   ||  a
            gggU  AACCGUGAU GUGUA  AACgag   ug  u
agaggcggaaga    AU         -     UU      uuu  ug 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr1: 844251-844336 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from gga-mir-96
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-96-5p

Accession MIMAT0037540
Description Gallus gallus gga-miR-96-5p mature miRNA
Sequence 9 - UUGGCACUAGCACAUUUUUGCU - 30
Evidence experimental
Illumina [2]

Mature gga-miR-96-3p

Accession MIMAT0037541
Description Gallus gallus gga-miR-96-3p mature miRNA
Sequence 50 - CAAUUAUGUGUAGUGCCAAUAU - 71
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196

  2. PubMed ID: 29079676
    Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation
    "Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H"
    Genome Res (2017) 12:1961-1973