Stem-loop sequence gga-mir-96

Accession

MI0029336 (change log)

Description

Gallus gallus miR-96 stem-loop

Literature search

6 open access papers mention gga-mir-96
(45 sentences)

Stem-loop

   ----------gg    cu         g     uu      --u  uu 
5'             cccg  uuggcacua cacau  uugcuu   gc  u
               ||||  ||||||||| |||||  ||||||   ||  a
3'             gggu  aaccgugau gugua  aacgag   ug  u
   agaggcggaaga    au         -     uu      uuu  ug 

Deep sequencing

485 reads, 0 reads per million, 5 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr1: 844251-844336 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gga-mir-96

• gga-mir-183: chr1: 844362-844459 [-]
• gga-mir-96: chr1: 844251-844336 [-]
• gga-mir-182: chr1: 843232-843313 [-]

Database links

• miRBase Tracker:MI0029336

Mature sequence gga-miR-96-5p

• Accession: MIMAT0037540
• Sequence: 9 - uuggcacuagcacauuuuugcu - 30
• Deep sequencing: 485 reads, 5 experiments
• Evidence: experimental; Illumina [2]

Mature sequence gga-miR-96-3p

• Accession: MIMAT0037541
• Sequence: 50 - caauuauguguagugccaauau - 71
• Evidence: experimental; Illumina [2]

References

1. PMID:24798503 "Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles" Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ Evol Dev. 16:189-196(2014).
2. PMID:29079676 "Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation" Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H Genome Res. [Epub prior to print](2017).