miRBase entry: gga-mir-190b

Stem-loop gga-mir-190b


Accession
MI0029340
Description
Gallus gallus gga-mir-190b precursor miRNA

Literature search
3 open access papers mention gga-mir-190b
(3 sentences)

Sequence

1051 reads, 22 reads per million, 5 experiments
cccugccucugucUGAUAUGUUUGAUAUUAGGUUGuuugauuggaaaccaaCUAAAUAUCAAACAUAUUCUUAcagcggcagggc
(((((((.((((..(((((((((((((((.((((((((......))).))))).))))))))))))).))..)))).))))))).

Structure
-       u    cU  -             A     -   ga 
 cccugcc cugu  GA UAUGUUUGAUAUU GGUUG uuu  u
 ||||||| ||||  || ||||||||||||| ||||| |||   
 gggacgg gacA  CU AUACAAACUAUAA UCaac aaa  u
c       c    UU  U             A     c   gg 


Annotation confidence Not enough data
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Genome context
chr25: 2120322-2120406 [-]

Database links

Mature gga-miR-190b-5p

Accession MIMAT0037546
Description Gallus gallus gga-miR-190b-5p mature miRNA
Sequence 14 - UGAUAUGUUUGAUAUUAGGUUG - 35
Evidence experimental
Illumina [2]

Mature gga-miR-190b-3p

Accession MIMAT0037547
Description Gallus gallus gga-miR-190b-3p mature miRNA
Sequence 52 - CUAAAUAUCAAACAUAUUCUUA - 73
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196

  2. PubMed ID: 29079676
    Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation
    "Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H"
    Genome Res (2017) 12:1961-1973