Stem-loop gga-mir-338

Accession

MI0029343

Description

Gallus gallus gga-mir-338 precursor miRNA

Literature search

1 open access papers mention gga-mir-338
(1 sentences)

Sequence

143201 reads, 1592 reads per million, 5 experiments

gcuccuccugcccAACAAUAUCCUGGUGCUGAGUgaguugcacacagagacUCCAGCAUCAGUGAUUUUGUUGAggaaggggagc
(((((.(((.((((((((.((((((((((((...(((((.(.....).)))))))))))))).))).)))))).)).))))))))

Structure

     u   g  -      U   -         AGU     g a 
gcucc ccu cc cAACAA AUC CUGGUGCUG   gaguu c c
||||| ||| || |||||| ||| |||||||||   ||||| | a
cgagg gga gg GUUGUU UAG GACUACGAC   CUcag g c
     -   a  A      U   U         ---     a a 

Annotation confidence High

Genome context

chr18: 9383522-9383606 [+]

Mature gga-miR-338-5p

• Accession: MIMAT0037551
• Description: Gallus gallus gga-miR-338-5p mature miRNA
• Sequence: 14 - AACAAUAUCCUGGUGCUGAGU - 34
• Evidence: experimental ; Illumina [2]

Mature gga-miR-338-3p

• Accession: MIMAT0037552
• Description: Gallus gallus gga-miR-338-3p mature miRNA
• Sequence: 52 - UCCAGCAUCAGUGAUUUUGUUGA - 74
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196


2. PubMed ID: 29079676
   Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation
   "Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H"
   Genome Res (2017) 12:1961-1973