Stem-loop rno-mir-193b

Accession

MI0030355

Description

Rattus norvegicus rno-mir-193b precursor miRNA

Gene family

MIPF0000082; mir-193

Literature search

23 open access papers mention rno-mir-193b
(127 sentences)

Sequence

39571 reads, 59 reads per million, 488 experiments

gugggcccagaaucGGGGUUUUGAGGGCGAGAugaguuuguguuuuauccAACUGGCCCACAAAGUCCCgcuuuuggggucau
((((.(((((((.((((((((((.((((.((.((.((.........)).)).)).)))).)))))))))).))))))).))))

Structure

    g       u          A    G  A  a  uug 
gugg cccagaa cGGGGUUUUG GGGC AG ug gu   u
|||| ||||||| |||||||||| |||| || || ||   g
uacu ggguuuu gCCCUGAAAC CCCG UC Ac ua   u
    g       c          A    G  A  c  uuu 

Annotation confidence High

Genome context

chr14: 30331049-30331131 [-]

Mature rno-miR-193b-5p

• Accession: MIMAT0035733
• Description: Rattus norvegicus rno-miR-193b-5p mature miRNA
• Sequence: 15 - GGGGUUUUGAGGGCGAGA - 32
• Evidence: experimental ; RNAseq-metaanalysis [1]

Mature rno-miR-193b-3p

• Accession: MIMAT0035734
• Description: Rattus norvegicus rno-miR-193b-3p mature miRNA
• Sequence: 51 - AACUGGCCCACAAAGUCCC - 69
• Evidence: experimental ; RNAseq-metaanalysis [1]

References

1. PubMed ID: 23329697
   Rat mir-155 generated from the lncRNA Bic is 'hidden' in the alternate genomic assembly and reveals the existence of novel mammalian miRNAs and clusters
   "Uva P, Da Sacco L, Del Corno M, Baldassarre A, Sestili P, Orsini M, Palma A, Gessani S, Masotti A"
   "RNA (2013) 19:365-379