Stem-loop tae-MIR396

Accession

MI0030381

Description

Triticum aestivum tae-MIR396 precursor miRNA

Literature search

21 open access papers mention tae-MIR396
(60 sentences)

Sequence

16082 reads, 115 reads per million, 116 experiments

ggcuuucuugAACUGUGAACUCGCGGGGAUGgggauucccuggauuguggcgcuccugccuucucuucggccgucuccgccuguugaugguucaagaaagccc
((((((((((((((((.(((..((((((((((.......(((((..(.(((......)))..)..)))))))))))))))..))).)))))))))))))))).

Structure

-                G   UC          ggauucc     uu -u   gc 
 ggcuuucuugAACUGU AAC  GCGGGGAUGg       cugga  g  ggc  u
 |||||||||||||||| |||  ||||||||||       |||||  |  |||   
 ccgaaagaacuuggua uug  cgccucugcc       ggcuu  c  ccg  c
c                g   uc          -------     cu uu   uc 

Annotation confidence Not enough data

Genome context

Unknown

Mature tae-miR396-5p

• Accession: MIMAT0035771
• Description: Triticum aestivum tae-miR396-5p mature miRNA
• Sequence: 11 - AACUGUGAACUCGCGGGGAUG - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24734873
   Identification and characterization of microRNAs in the flag leaf and developing seed of wheat (Triticum aestivum L.)
   Han R, Jian C, Lv J, Yan Y, Chi Q, Li Z, Wang Q, Zhang J, Liu X, Zhao H
   BMC Genomics (2014) 15:289