miRBase entry: tae-MIR5062

Stem-loop tae-MIR5062


Accession
MI0030391
Description
Triticum aestivum tae-MIR5062 precursor miRNA
Gene family
MIPF0001922; MIR5062

Literature search
4 open access papers mention tae-MIR5062
(7 sentences)

Sequence

29907 reads, 178 reads per million, 116 experiments
cguagcuucuUGAACCUUAGGGAACAGCCGCAUaacaccauuaacuugaaaaccacuuaucuuaucccaaaacugcuccuaccacaauauaagggguaaggaaugguuuuuaguuugugaggucaugcggauuuuucaccaagguucaagugguuauc
.((((((.((((((((((.(((((.((((((((.((..(((.((((.((((((((.((.(((((((((........................))))))))))))))))))))))).)))..)).)))))).)).))).)))))))))))).)))))).

Structure
c      u          A  -   C  -      a  ac   u    u        c  a         aaaacugcucc 
 guagcu cuUGAACCUU GG GAA AG CCGCAU ac  cau aacu gaaaacca uu ucuuauccc           u
 |||||| |||||||||| || ||| || |||||| ||  ||| |||| |||||||| || |||||||||            
 uauugg gaacuuggaa cc cuu uu ggcgua ug  gug uuga uuuuuggu aa ggaaugggg           a
c      u          -  a   u  a      c  ga   u    -        -  -         aauauaacacc 


Annotation confidence High
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature tae-miR5062-5p

Accession MIMAT0035781
Description Triticum aestivum tae-miR5062-5p mature miRNA
Sequence 11 - UGAACCUUAGGGAACAGCCGCAU - 33
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24734873
    Identification and characterization of microRNAs in the flag leaf and developing seed of wheat (Triticum aestivum L.)
    Han R, Jian C, Lv J, Yan Y, Chi Q, Li Z, Wang Q, Zhang J, Liu X, Zhao H
    BMC Genomics (2014) 15:289