miRBase entry: tae-MIR9672a

Stem-loop tae-MIR9672a


Accession
MI0030400
Description
Triticum aestivum tae-MIR9672a precursor miRNA
Gene family
MIPF0001942; MIR9672

Literature search
2 open access papers mention tae-MIR9672a
(3 sentences)

Sequence

596138 reads, 1054 reads per million, 116 experiments
ucuguuugaagugaagaugaugcuuaaugacagucguggugucuuagaagagccaggcgacuaugucuacgcuggccauuaagcaucgucuuugccuaggacaCCACGACUGUCAUUAAGCAUCgccuucaccccaaacagagcc
((((((((..((((((.((((((((((((((((((((((((((((((....(((((..(((...)))....)))))......(((.......))))))))))))))))))))))))))))))))).))))))..))))))))...

Structure
---        aa      a                              ---------------aaga     --gc   u 
   ucuguuug  gugaag ugaugcuuaaugacagucguggugucuuag                   gccag    gac  
   ||||||||  |||||| ||||||||||||||||||||||||||||||                   |||||    ||| a
   agacaaac  cacuuc gCUACGAAUUACUGUCAGCACCacaggauc                   cgguc    cug  
ccg        cc      c                              cguuucugcuacgaauuac     gcau   u 


Annotation confidence Not enough data
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Genome context
5A: 67467149-67467293 [+]

Database links

Mature tae-miR9672a-3p

Accession MIMAT0035790
Description Triticum aestivum tae-miR9672a-3p mature miRNA
Sequence 104 - CCACGACUGUCAUUAAGCAUC - 124
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24734873
    Identification and characterization of microRNAs in the flag leaf and developing seed of wheat (Triticum aestivum L.)
    Han R, Jian C, Lv J, Yan Y, Chi Q, Li Z, Wang Q, Zhang J, Liu X, Zhao H
    BMC Genomics (2014) 15:289