Stem-loop sequence tae-MIR5175

Accession

MI0030402 (change log)

Description

Triticum aestivum miR5175 stem-loop

Gene family

MIPF0001200; MIR5067

Literature search

2 open access papers mention tae-MIR5175
(14 sentences)

Stem-loop

   -                                     c  a 
5'  acucccucuguuccaaauuacucgucgugguuuuagu ca a
    ||||||||||||||||||||||||||||||||||||| ||  
3'  ugagggaggcaagguuuaaugagcaguaccaaaauca gu u
   a                                     a  u 

Deep sequencing

141378 reads, 228 reads per million, 116 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates: 2A: 152624513-152624597 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0030402

Mature sequence tae-miR5175-5p

• Accession: MIMAT0035792
• Sequence: 11 - uuccaaauuacucgucguggu - 31
• Deep sequencing: 35718 reads, 116 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:24734873 "Identification and characterization of microRNAs in the flag leaf and developing seed of wheat (Triticum aestivum L.)" Han R, Jian C, Lv J, Yan Y, Chi Q, Li Z, Wang Q, Zhang J, Liu X, Zhao H BMC Genomics. 15:289(2014).