Stem-loop tae-MIR397

Accession

MI0030405

Description

Triticum aestivum tae-MIR397 precursor miRNA

Gene family

MIPF0000120; MIR397

Literature search

12 open access papers mention tae-MIR397
(33 sentences)

Sequence

70047 reads, 404 reads per million, 116 experiments

cgcaaaggugccauugagugcagcguugaugaaccguccuacuccuccgaggccggagcgguUCACCGGCGCUGCACACAAUGacggcucugc
.(((.((.((.(((((.(((((((((((.((((((((((..(((....)))...))).))))))).))))))))))).))))).)).)).)))

Structure

c   a  g  c     a           a       -   -ua   c 
 gca ag ug cauug gugcagcguug ugaaccg ucc   cuc u
 ||| || || ||||| ||||||||||| ||||||| |||   |||  
 cgu uc gc GUAAC CACGUCGCGGC ACUuggc agg   gag c
-   c  g  a     A           C       g   ccg   c 

Annotation confidence High

Genome context

6A: 120354266-120354358 [-]

Mature tae-miR397-5p

• Accession: MIMAT0035795
• Description: Triticum aestivum tae-miR397-5p mature miRNA
• Sequence: 63 - UCACCGGCGCUGCACACAAUG - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24734873
   Identification and characterization of microRNAs in the flag leaf and developing seed of wheat (Triticum aestivum L.)
   Han R, Jian C, Lv J, Yan Y, Chi Q, Li Z, Wang Q, Zhang J, Liu X, Zhao H
   BMC Genomics (2014) 15:289