Stem-loop hvu-MIR397b

Accession

MI0030545

Description

Hordeum vulgare hvu-MIR397b precursor miRNA

Gene family

MIPF0000120; MIR397

Literature search

4 open access papers mention hvu-MIR397b
(24 sentences)

Sequence

gcagaggcgucauugcgugcagcgccggugaaccgcuccggccucgguggaggcggacgggccauggccggacgguucAUCAACGCUGCACUCAACGGCaccucugc
(((((((.(((.(((.((((((((..(((((((((.(((((((..(((...(.....)..)))..))))))))))))))))..)))))))).))).))).)))))))

Structure

       c   a   c        cc         c       uc   gga g 
gcagagg guc uug gugcagcg  ggugaaccg uccggcc  ggu   g c
||||||| ||| ||| ||||||||  ||||||||| |||||||  |||   | g
cgucucc CGG AAC CACGUCGC  CUAcuuggc aggccgg  ccg   c g
       a   C   U        AA         -       ua   -gg a 

Annotation confidence Not enough data

Genome context

Unknown

Mature hvu-miR397b-3p

• Accession: MIMAT0035814
• Description: Hordeum vulgare hvu-miR397b-3p mature miRNA
• Sequence: 79 - AUCAACGCUGCACUCAACGGC - 99
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 23324356
   Developmentally regulated expression and complex processing of barley pri-microRNAs
   Kruszka K, Pacak A, Swida-Barteczka A, Stefaniak AK, Kaja E, Sierocka I, Karlowski W, Jarmolowski A, Szweykowska-Kulinska Z
   BMC Genomics (2013) 14:34