miRBase entry: chi-mir-145

Stem-loop chi-mir-145


Accession
MI0030631
Description
Capra hircus chi-mir-145 precursor miRNA
Gene family
MIPF0000079; mir-145

Literature search
8 open access papers mention chi-mir-145
(26 sentences)

Sequence

caccuuguccucacgGUCCAGUUUUCCCAGGAAUCCCUuagaugcuaagauggggAUUCCUGGAAAUACUGUUCUUgaggucaugguu
.(((.((.(((((.((..((((.((.((((((((((((.............)))))))))))).)).))))..))))))).)).))).

Structure
c   u  u     c  UC    U  C            uagau 
 acc ug ccuca gG  CAGU UU CCAGGAAUCCCU     g
 ||| || ||||| ||  |||| || ||||||||||||     c
 ugg ac ggagU UC  GUCA AA GGUCCUUAgggg     u
u   u  u     -  UU    U  A            uagaa 


Annotation confidence Not enough data
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Genome context
chr7: 60509933-60510020 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from chi-mir-145
Name Accession Chromosome Start End Strand Confidence




Database links

Mature chi-miR-145-5p

Accession MIMAT0035967
Description Capra hircus chi-miR-145-5p mature miRNA
Sequence 16 - GUCCAGUUUUCCCAGGAAUCCCU - 38
Evidence experimental
Illumina [1]

Mature chi-miR-145-3p

Accession MIMAT0035968
Description Capra hircus chi-miR-145-3p mature miRNA
Sequence 56 - AUUCCUGGAAAUACUGUUCUU - 76
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40