miRBase entry: chi-mir-196b

Stem-loop chi-mir-196b


Accession
MI0030672
Description
Capra hircus chi-mir-196b precursor miRNA
Gene family
MIPF0000031; mir-196

Literature search
3 open access papers mention chi-mir-196b
(3 sentences)

Sequence

aacuggucggugauuUAGGUAGUUUCCUGUUGUUGGgauccaccuuucucucgacagcacgacacugccuucauuacuucaguug
((((((..((((((..(((((((.((.(((((((((((..........))))))))))).)).)))))))..)))))))))))).

Structure
-      uc      uU       U  C           ucca 
 aacugg  ggugau  AGGUAGU UC UGUUGUUGGga    c
 ||||||  ||||||  ||||||| || |||||||||||     
 uugacu  ucauua  uccguca ag acgacagcucu    c
g      --      cu       c  c           cuuu 


Annotation confidence Not enough data
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Genome context
chr4: 70532571-70532655 [+]

Database links

Mature chi-miR-196b

Accession MIMAT0036033
Description Capra hircus chi-miR-196b mature miRNA
Sequence 16 - UAGGUAGUUUCCUGUUGUUGG - 36
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40