miRBase entry: chi-mir-335

Stem-loop chi-mir-335


Accession
MI0030747
Description
Capra hircus chi-mir-335 precursor miRNA
Gene family
MIPF0000196; mir-335

Literature search
2 open access papers mention chi-mir-335
(6 sentences)

Sequence

cuuuugggcgggggUCAAGAGCAAUAACGAAAAAUguuugucauaaaccgUUUUUCAUUAUUGCUCCUGACCuccucucauuugcuguauuc
....((((.((((((((.(((((((((.((((((((.((......)).)))))))).))))))))).)))))))).))))............

Structure
--------cuuu    c        A         C        u  gu 
            uggg gggggUCA GAGCAAUAA GAAAAAUg uu  c
            |||| |||||||| ||||||||| |||||||| ||   
            acuc ccuCCAGU CUCGUUAUU CUUUUUgc aa  a
cuuaugucguuu    u        C         A        c  au 


Annotation confidence Not enough data
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Genome context
chr4: 96880780-96880871 [+]

Database links

Mature chi-miR-335-5p

Accession MIMAT0036147
Description Capra hircus chi-miR-335-5p mature miRNA
Sequence 15 - UCAAGAGCAAUAACGAAAAAU - 35
Evidence experimental
Illumina [1]

Mature chi-miR-335-3p

Accession MIMAT0036148
Description Capra hircus chi-miR-335-3p mature miRNA
Sequence 51 - UUUUUCAUUAUUGCUCCUGACC - 72
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40