miRBase entry: chi-mir-3959

Stem-loop chi-mir-3959


Accession
MI0030781
Description
Capra hircus chi-mir-3959 precursor miRNA
Gene family
MIPF0000126; mir-379


Sequence

augguccgugauaggggaguggauGGUUGAUCAGAGAACAUACAUUuugucaaugaUGUAUGUCAACUGAUCCACAGUcccucccuauccagucacuucuc
.......(((((.((((((.((((.((.((((((...(((((((((........)))))))))...)))))).)).)))))))))).....))))).....

Structure
auggucc     ----a      u    G  U      AGA         uug 
       gugau     ggggag ggau GU GAUCAG   ACAUACAUU   u
       |||||     |||||| |||| || ||||||   |||||||||    
       cacug     ucccuc ccUG CA CUAGUC   UGUAUGUag   c
--cucuu     accua      -    A  C      AAC         uaa 


Annotation confidence Not enough data
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Genome context
chr21: 67127378-67127478 [+]
Clustered miRNAs
11 other miRNAs are < 10 kb from chi-mir-3959
Name Accession Chromosome Start End Strand Confidence




Database links

Mature chi-miR-3959-5p

Accession MIMAT0036207
Description Capra hircus chi-miR-3959-5p mature miRNA
Sequence 25 - GGUUGAUCAGAGAACAUACAUU - 46
Evidence experimental
Illumina [1]

Mature chi-miR-3959-3p

Accession MIMAT0036208
Description Capra hircus chi-miR-3959-3p mature miRNA
Sequence 57 - UGUAUGUCAACUGAUCCACAGU - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40