Stem-loop chi-mir-3959

Accession

MI0030781

Description

Capra hircus chi-mir-3959 precursor miRNA

Sequence

augguccgugauaggggaguggauGGUUGAUCAGAGAACAUACAUUuugucaaugaUGUAUGUCAACUGAUCCACAGUcccucccuauccagucacuucuc
.......(((((.((((((.((((.((.((((((...(((((((((........)))))))))...)))))).)).)))))))))).....))))).....

Structure

auggucc     ----a      u    G  U      AGA         uug 
       gugau     ggggag ggau GU GAUCAG   ACAUACAUU   u
       |||||     |||||| |||| || ||||||   |||||||||    
       cacug     ucccuc ccUG CA CUAGUC   UGUAUGUag   c
--cucuu     accua      -    A  C      AAC         uaa 

Annotation confidence Not enough data

Genome context

chr21: 67127378-67127478 [+]

Clustered miRNAs

11 other miRNAs are < 10 kb from chi-mir-3959

Mature chi-miR-3959-5p

• Accession: MIMAT0036207
• Description: Capra hircus chi-miR-3959-5p mature miRNA
• Sequence: 25 - GGUUGAUCAGAGAACAUACAUU - 46
• Evidence: experimental ; Illumina [1]

Mature chi-miR-3959-3p

• Accession: MIMAT0036208
• Description: Capra hircus chi-miR-3959-3p mature miRNA
• Sequence: 57 - UGUAUGUCAACUGAUCCACAGU - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40