miRBase entry: oha-mir-1306

Stem-loop oha-mir-1306

Accession

MI0031334

Description

Ophiophagus hannah oha-mir-1306 precursor miRNA

Gene family

MIPF0000531; mir-1306

Sequence

caacgaacagccucCACCACCUCCCCUGCAAACGUCCagugacgcagagguaaUGGACGUUAGCUCCGGUGGUGAUggacagucagauaccc
....((....((..(((((((......((.((((((((...((......))..)))))))).))...)))))))..))....))........

Structure

----caac  acag  uc       UCCCCU  A        gug  gc 
        ga    cc  CACCACC      GC AACGUCCa   ac  a
        ||    ||  |||||||      || ||||||||   ||   
        cu    gg  GUGGUGG      CG UUGCAGGU   ug  g
cccauaga  gaca  UA       ---CCU  A        -aa  ga

Annotation confidence Not enough data

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Genome context

AZIM01003844.1: 64424-64515 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from oha-mir-1306

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oha-miR-1306-5p

Accession	MIMAT0036685
Description	Ophiophagus hannah oha-miR-1306-5p mature miRNA
Sequence	15 - CACCACCUCCCCUGCAAACGUCC - 37
Evidence	not_experimental

Mature oha-miR-1306-3p

Accession	MIMAT0036686
Description	Ophiophagus hannah oha-miR-1306-3p mature miRNA
Sequence	54 - UGGACGUUAGCUCCGGUGGUGAU - 76
Evidence	not_experimental

References

PubMed ID: 24297900
The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
"Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wuster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pl"
"Proc Natl Acad Sci U S A (2013) 110:20651-20656