miRBase entry: oha-mir-15a

Stem-loop oha-mir-15a

Accession

MI0031366

Description

Ophiophagus hannah oha-mir-15a precursor miRNA

Gene family

MIPF0000006; mir-15

Sequence

ucuggaagccucagaguacuaUAGCAGCACAUCAUGAUUUGUguuucauaauaaauaugCAAGUCAUUAUUUGCUGCUUUagaauuuuaaggaagaaaa
........(((.(((((.(((.(((((((.((.(((((((((((............))))))))))).)).))))))).))).))))).))).......

Structure

ucuggaag   c     a   U       C  C           uucau 
        ccu agagu cua AGCAGCA AU AUGAUUUGUgu     a
        ||| ||||| ||| ||||||| || |||||||||||      
        gga uuuua gaU UCGUCGU UA UACUGAACgua     a
-aaaagaa   a     a   U       U  U           uaaau

Annotation confidence Not enough data

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Genome context

AZIM01000178.1: 249265-249363 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from oha-mir-15a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oha-miR-15a-5p

Accession	MIMAT0036740
Description	Ophiophagus hannah oha-miR-15a-5p mature miRNA
Sequence	22 - UAGCAGCACAUCAUGAUUUGU - 42
Evidence	not_experimental

Mature oha-miR-15a-3p

Accession	MIMAT0036741
Description	Ophiophagus hannah oha-miR-15a-3p mature miRNA
Sequence	60 - CAAGUCAUUAUUUGCUGCUUU - 80
Evidence	not_experimental

References

PubMed ID: 24297900
The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
"Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wuster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pl"
"Proc Natl Acad Sci U S A (2013) 110:20651-20656