Stem-loop sequence ata-MIR167d

Accession

MI0031719 (change log)

Description

Aegilops tauschii miR167d stem-loop

Gene family

MIPF0000023; MIR167_1

Literature search

1 open access papers mention ata-MIR167d
(12 sentences)

Stem-loop

   -  ca  u              g          aa  u         g    ---- ug          uc 
5'  ca  ag agaugaagcugcca caugaucuga  gc agcuauguu caug    u  aucuugaugg  a
    ||  || |||||||||||||| ||||||||||  || ||||||||| ||||    |  ||||||||||   
3'  gu  uc uuuacuucgacggu guacuggacu  cg ucgguacgg guac    a  uagaacuacc  u
   g  ac  u              -          aa  -         -    caga gu          uc 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (ASM34733v2; GCA_000347335.2): chr4: 348738068-348738203 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0031719

Mature sequence ata-miR167d-5p

• Accession: MIMAT0037232
• Sequence: 11 - ugaagcugccagcaugaucuga - 32
• Evidence: experimental; Illumina [1]

Mature sequence ata-miR167d-3p

• Accession: MIMAT0037233
• Sequence: 107 - aggucauguggcagcuucauu - 127
• Evidence: experimental; Illumina [1]

References

1. PMID:23535592 "Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation" Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu Nature. 496:91-95(2013).