miRBase entry: ata-MIR167d

Stem-loop ata-MIR167d


Accession
MI0031719
Description
Aegilops tauschii ata-MIR167d precursor miRNA
Gene family
MIPF0000023; MIR167_1

Literature search
1 open access papers mention ata-MIR167d
(12 sentences)

Sequence

cacaaguagaUGAAGCUGCCAGCAUGAUCUGAaagcuagcuauguugcauguugaucuugauggucaucuccaucaagauugaagaccaugggcauggcugcaaucAGGUCAUGUGGCAGCUUCAUUuucucaugg
((..((.((((((((((((((.((((((((((..((.(((((((((.(((((((((((((((((......)))))))))))))....)))))))))))))))..)))))))))))))))))))))))).))..)).

Structure
-  ca  u              G          aa  u         g    ----             uc 
 ca  ag agaUGAAGCUGCCA CAUGAUCUGA  gc agcuauguu caug    uugaucuugaugg  a
 ||  || |||||||||||||| ||||||||||  || ||||||||| ||||    |||||||||||||   
 gu  uc uUUACUUCGACGGU GUACUGGAcu  cg ucgguacgg guac    aguuagaacuacc  u
g  ac  u              -          aa  -         -    caga             uc 


Annotation confidence Not enough data
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Genome context
chr4: 348738068-348738203 [+]

Database links

Mature ata-miR167d-5p

Accession MIMAT0037232
Description Aegilops tauschii ata-miR167d-5p mature miRNA
Sequence 11 - UGAAGCUGCCAGCAUGAUCUGA - 32
Evidence experimental
Illumina [1]

Mature ata-miR167d-3p

Accession MIMAT0037233
Description Aegilops tauschii ata-miR167d-3p mature miRNA
Sequence 107 - AGGUCAUGUGGCAGCUUCAUU - 127
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23535592
    Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
    "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
    "Nature (2013) 496:91-95