Stem-loop sequence egr-mir-3479a

AccessionMI0033108 (change log)
DescriptionEchinococcus granulosus miR-3479a stem-loop
Literature search

2 open access papers mention egr-mir-3479a
(9 sentences)

Stem-loop 
   --cacaac        uu a    uu      g 
5'         ggugaaag  u ugca  uacauc g
           ||||||||  | ||||  ||||||  
3'         ccgcuuuc  g acgu  auguag u
   acguucua        uu c    -u      u
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (ASM52419v1; GCA_000524195.1) Overlapping transcripts
APAU02000006.1: 1737369-1737433 [-]
intergenic
Clustered miRNAs
< 10kb from egr-mir-3479a
egr-mir-7bAPAU02000006.1: 1743289-1743385 [+]
egr-mir-3479aAPAU02000006.1: 1737369-1737433 [-]
Database links

Mature sequence egr-miR-3479a-5p

Accession MIMAT0041183
Sequence

6 -  

cggugaaaguuuaugcauuua

 - 26

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Evidence experimental; Illumina [1-2]

Mature sequence egr-miR-3479a-3p

Accession MIMAT0041184
Sequence

39 -  

uauugcacguucuuucgccauc

 - 60

Get sequence
Evidence experimental; Illumina [1-2]

References

1
PMID:25168356 "Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus" Bai Y, Zhang Z, Jin L, Kang H, Zhu Y, Zhang L, Li X, Ma F, Zhao L, Shi B, Li J, McManus DP, Zhang W, Wang S BMC Genomics. 15:736(2014).
2
PMID:25656283 "microRNA profiling in the zoonotic parasite Echinococcus canadensis using a high-throughput approach" Macchiaroli N, Cucher M, Zarowiecki M, Maldonado L, Kamenetzky L, Rosenzvit MC Parasit Vectors. 8:83(2015).