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Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus |
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| PubMed ID | 25168356 |
| Authors | Bai Y, Zhang Z, Jin L, Kang H, Zhu Y, Zhang L, Li X, Ma F, Zhao L, Shi B, Li J, McManus DP, Zhang W, Wang S |
| Journal | BMC Genomics |
| Volume | 15 |
| Pages | 736 |
| Name | Accession | RPM | Chromosome | Start | End | Strand | Confidence |
|---|---|---|---|---|---|---|---|
| egr-bantam | MI0033103 | None | APAU02000171.1 | 120982 | 121066 | - | - |
| egr-mir-61 | MI0033104 | None | APAU02000003.1 | 1828873 | 1828958 | + | - |
| egr-mir-31 | MI0033105 | None | APAU02000211.1 | 49499 | 49569 | - | - |
| egr-mir-10227a | MI0033106 | None | APAU02000041.1 | 52250 | 52316 | + | - |
| egr-mir-2162 | MI0033107 | None | APAU02000040.1 | 661467 | 661534 | + | - |
| egr-mir-3479a | MI0033108 | None | APAU02000006.1 | 1737369 | 1737433 | - | - |
| egr-mir-10228 | MI0033109 | None | APAU02000061.1 | 48091 | 48168 | - | - |
| egr-mir-281 | MI0033110 | None | APAU02000006.1 | 1258746 | 1258814 | - | - |
| egr-mir-10229a | MI0033111 | None | APAU02000041.1 | 53902 | 53966 | - | - |
| egr-mir-36a | MI0033112 | None | APAU02000028.1 | 704585 | 704669 | + | - |
| egr-mir-10227b | MI0033113 | None | APAU02000041.1 | 46139 | 46205 | + | - |
| egr-mir-133 | MI0033114 | None | APAU02000107.1 | 129469 | 129541 | + | - |
| egr-mir-1992 | MI0033115 | None | APAU02000092.1 | 131559 | 131636 | + | - |
| egr-mir-10229b | MI0033116 | None | APAU02000041.1 | 53709 | 53781 | - | - |
| egr-mir-10227c | MI0033117 | None | APAU02000041.1 | 46426 | 46492 | + | - |
| egr-mir-10230 | MI0033118 | None | APAU02000006.1 | 101250 | 101312 | - | - |
| egr-mir-10231 | MI0033119 | None | APAU02000079.1 | 310226 | 310286 | - | - |
| egr-mir-10232 | MI0033120 | None | APAU02000025.1 | 843986 | 844050 | - | - |
| egr-mir-10233 | MI0033121 | None | APAU02000032.1 | 665609 | 665681 | - | - |
| egr-mir-10234 | MI0033122 | None | APAU02000076.1 | 289314 | 289392 | - | - |
| egr-mir-10235 | MI0033123 | None | APAU02000076.1 | 160450 | 160513 | + | - |
| egr-mir-10236 | MI0033124 | None | APAU02000010.1 | 1558302 | 1558367 | - | - |
| egr-mir-10237 | MI0033125 | None | APAU02000001.1 | 3563954 | 3564013 | - | - |
| egr-mir-10238 | MI0033126 | None | APAU02000026.1 | 124155 | 124236 | - | - |
| egr-mir-10239 | MI0033127 | None | APAU02000065.1 | 138163 | 138226 | - | - |
| egr-mir-10240 | MI0033128 | None | APAU02000182.1 | 97021 | 97104 | + | - |
| egr-mir-10241 | MI0033129 | None | APAU02000008.1 | 1606466 | 1606542 | - | - |
| egr-mir-10227d | MI0033130 | None | APAU02000203.1 | 69024 | 69090 | + | - |
| egr-mir-10242 | MI0033131 | None | APAU02000149.1 | 53758 | 53814 | - | - |
| egr-mir-10243 | MI0033132 | None | APAU02000164.1 | 27948 | 28038 | + | - |
| egr-mir-10244 | MI0033133 | None | APAU02000081.1 | 280110 | 280162 | - | - |
| egr-mir-10245 | MI0033134 | None | APAU02000001.1 | 2752425 | 2752488 | - | - |
| egr-mir-36b | MI0033135 | None | APAU02000003.1 | 597050 | 597142 | + | - |
| egr-mir-10247 | MI0033136 | None | APAU02000279.1 | 25695 | 25760 | + | - |
| egr-mir-10248 | MI0033137 | None | APAU02000047.1 | 234474 | 234534 | - | - |
| egr-mir-10249 | MI0033138 | None | APAU02000002.1 | 2432881 | 2432939 | - | - |
| egr-mir-10227e | MI0033139 | None | APAU02000041.1 | 46709 | 46775 | + | - |
| egr-mir-10250 | MI0033140 | None | APAU02000053.1 | 558336 | 558396 | + | - |
| egr-mir-10251 | MI0033141 | None | APAU02000152.1 | 169610 | 169667 | + | - |
| egr-mir-10252 | MI0033142 | None | APAU02000015.1 | 1328238 | 1328307 | - | - |
| egr-mir-2d | MI0033143 | None | APAU02000027.1 | 925654 | 925717 | - | - |
| egr-mir-10253 | MI0033144 | None | APAU02000003.1 | 539111 | 539176 | - | - |
| egr-mir-10254 | MI0033145 | None | APAU02000228.1 | 50235 | 50315 | - | - |
| egr-mir-10255 | MI0033146 | None | APAU02000028.1 | 632782 | 632856 | - | - |
| egr-mir-10256 | MI0033147 | None | APAU02000149.1 | 2603 | 2670 | - | - |
| egr-mir-10257 | MI0033148 | None | APAU02000186.1 | 30323 | 30398 | - | - |
| egr-mir-10258 | MI0033149 | None | APAU02000021.1 | 673608 | 673703 | + | - |
| egr-mir-10259 | MI0033150 | None | APAU02000021.1 | 981776 | 981834 | - | - |
| egr-mir-10260 | MI0033151 | None | APAU02000007.1 | 940042 | 940124 | + | - |
| egr-mir-10261 | MI0033152 | None | APAU02000003.1 | 1901528 | 1901620 | + | - |
| egr-mir-10262 | MI0033153 | None | APAU02000031.1 | 454221 | 454291 | + | - |
| egr-mir-10263 | MI0033154 | None | APAU02000042.1 | 460162 | 460232 | - | - |
| egr-mir-10264 | MI0033155 | None | APAU02000213.1 | 78410 | 78500 | + | - |
| egr-mir-10265 | MI0033156 | None | APAU02000008.1 | 1500491 | 1500566 | - | - |
| egr-mir-10266 | MI0033157 | None | APAU02000013.1 | 333868 | 333931 | - | - |
| egr-mir-10267 | MI0033158 | None | APAU02000009.1 | 640818 | 640900 | - | - |
| egr-mir-10268 | MI0033159 | None | APAU02000008.1 | 361966 | 362014 | + | - |
| egr-mir-10269 | MI0033160 | None | APAU02000004.1 | 1560918 | 1560993 | + | - |
| egr-mir-10270 | MI0033161 | None | APAU02000009.1 | 84655 | 84714 | + | - |
| egr-mir-10271 | MI0033162 | None | APAU02000012.1 | 8571 | 8643 | + | - |
| egr-mir-10272 | MI0033163 | None | APAU02000197.1 | 77644 | 77724 | - | - |
| egr-mir-10273 | MI0033164 | None | APAU02000010.1 | 903328 | 903377 | - | - |
| egr-mir-10274 | MI0033165 | None | APAU02000010.1 | 345715 | 345765 | + | - |
| egr-mir-10275 | MI0033166 | None | APAU02000007.1 | 1097831 | 1097913 | + | - |
| egr-mir-10276 | MI0033167 | None | APAU02000168.1 | 121161 | 121222 | + | - |
| egr-mir-10277 | MI0033168 | None | APAU02000138.1 | 55095 | 55148 | + | - |
| egr-mir-10278 | MI0033169 | None | APAU02000024.1 | 180610 | 180694 | - | - |
| egr-mir-10279 | MI0033170 | None | APAU02000004.1 | 878205 | 878274 | - | - |
| egr-mir-10280 | MI0033171 | None | APAU02000021.1 | 516085 | 516136 | + | - |
| egr-mir-10281 | MI0033172 | None | APAU02000008.1 | 1820633 | 1820715 | - | - |
| egr-mir-10282 | MI0033173 | None | APAU02000082.1 | 231167 | 231223 | + | - |
| egr-mir-10283 | MI0033174 | None | APAU02000013.1 | 697615 | 697662 | + | - |
| egr-mir-10284 | MI0033175 | None | APAU02000012.1 | 987316 | 987393 | + | - |
| egr-mir-10285 | MI0033176 | None | APAU02000057.1 | 342935 | 342989 | - | - |
| egr-mir-10286 | MI0033177 | None | APAU02000014.1 | 57549 | 57629 | + | - |
| egr-mir-10287 | MI0033178 | None | APAU02000009.1 | 1596898 | 1596980 | + | - |
| egr-mir-10288 | MI0033179 | None | APAU02000017.1 | 396344 | 396427 | - | - |
| egr-mir-10289 | MI0033180 | None | APAU02000200.1 | 74546 | 74620 | - | - |
| egr-mir-10290 | MI0033181 | None | APAU02000020.1 | 430704 | 430787 | - | - |
| egr-mir-10291 | MI0033182 | None | APAU02000092.1 | 285597 | 285670 | - | - |
| egr-mir-10292 | MI0033183 | None | APAU02000387.1 | 1545 | 1620 | - | - |
| egr-mir-307 | MI0033184 | None | APAU02000021.1 | 217703 | 217780 | + | - |
| egr-mir-10293 | MI0033185 | None | APAU02000036.1 | 266794 | 266861 | + | - |
| sme-bantam-a | MI0005119 | None | Contig215 | 4136 | 4199 | - | - |
| sme-bantam-b | MI0005120 | None | Contig362 | 106656 | 106734 | - | - |
| sme-bantam-c-1 | MI0005121 | None | Contig33813 | 3009 | 3073 | - | - |
| sme-let-7a | MI0005122 | None | None | None | - | ||
| sme-let-7b | MI0005123 | None | Contig20276 | 1039 | 1119 | + | - |
| sme-let-7c | MI0005124 | None | Contig10988 | 10654 | 10748 | - | - |
| sme-mir-7a | MI0005136 | None | Contig4049 | 1281 | 1351 | + | - |
| sme-mir-7b | MI0005137 | None | Contig511 | 137580 | 137689 | + | - |
| sme-mir-7c | MI0005138 | None | Contig14269 | 19335 | 19426 | + | - |
| sme-mir-10b | MI0005140 | None | Contig24755 | 3773 | 3876 | - | - |
| sme-mir-12 | MI0005141 | None | Contig14699 | 8967 | 9070 | - | - |
| sme-mir-31a | MI0005145 | None | Contig18208 | 1122 | 1220 | - | - |
| sme-mir-31b-1 | MI0005146 | None | Contig5733 | 42326 | 42410 | + | - |
| sme-mir-71a-1 | MI0005149 | None | Contig1403 | 125898 | 125981 | + | - |
| sme-mir-71a-2 | MI0005150 | None | Contig2151 | 51077 | 51154 | + | - |
| sme-mir-71b | MI0005151 | None | Contig1374 | 32561 | 32660 | - | - |
| sme-mir-71c | MI0005152 | None | Contig297 | 116135 | 116216 | - | - |
| sme-mir-92 | MI0005156 | None | Contig5274 | 27363 | 27446 | + | - |
| sme-mir-124a | MI0005157 | None | Contig19989 | 5815 | 5897 | - | - |
| sme-mir-124b | MI0005158 | None | Contig12040 | 20049 | 20132 | - | - |
| sme-mir-125a | MI0005160 | None | Contig13184 | 12140 | 12234 | - | - |
| sme-mir-125b | MI0005161 | None | Contig20519 | 5873 | 5963 | + | - |
| sme-mir-184 | MI0005163 | None | Contig15109 | 7642 | 7731 | + | - |
| sme-mir-277a | MI0005168 | None | Contig23836 | 3905 | 3995 | - | - |
| sme-mir-277b | MI0005169 | None | Contig23836 | 4203 | 4283 | - | - |
| sme-mir-277c | MI0005170 | None | Contig520 | 104019 | 104106 | + | - |
| sme-mir-278 | MI0005171 | None | Contig1271 | 12661 | 12758 | - | - |
| sme-mir-750 | MI0005176 | None | Contig1078 | 22657 | 22761 | + | - |
| sme-mir-277d | MI0005183 | None | Contig520 | 103909 | 103989 | + | - |
| sme-mir-10a | MI0010763 | None | Contig3771 | 5918 | 6010 | - | - |
| sme-let-7d | MI0010765 | None | Contig605 | 55692 | 55790 | + | - |
| sme-mir-216 | MI0010785 | None | Contig23847 | 7596 | 7698 | - | - |
| sme-mir-1175 | MI0010789 | None | Contig3917 | 32832 | 32930 | + | - |
| sme-mir-7d | MI0010793 | None | Contig17271 | 6045 | 6169 | + | - |
| sme-mir-2160-1 | MI0010794 | None | Contig12997 | 19613 | 19716 | + | - |
| sme-mir-96a | MI0010803 | None | Contig10175 | 11049 | 11156 | - | - |
| sme-mir-96b | MI0010817 | None | Contig4508 | 34953 | 35054 | - | - |
| sme-mir-315 | MI0010828 | None | Contig20390 | 2450 | 2553 | + | - |
| sme-mir-76 | MI0010935 | None | Contig18565 | 5370 | 5455 | + | - |
| sme-mir-31b-2 | MI0010945 | None | Contig27737 | 4917 | 4980 | + | - |
| sme-mir-2160-2 | MI0010948 | None | Contig31371 | 1017 | 1109 | + | - |
| sme-bantam-c-2 | MI0010953 | None | Contig483 | 150256 | 150320 | + | - |
| sme-mir-31b-3 | MI0010954 | None | Contig27737 | 5595 | 5658 | + | - |
| egr-let-7 | MI0017774 | None | APAU02000098.1 | 276822 | 276898 | + | - |
| egr-mir-7 | MI0017779 | None | APAU02000012.1 | 579477 | 579557 | - | - |
| egr-mir-10a | MI0017782 | None | APAU02000001.1 | 92728 | 92805 | + | - |
| egr-mir-71 | MI0017783 | None | APAU02000027.1 | 925546 | 925631 | + | - |
| egr-mir-124a | MI0017785 | None | APAU02000103.1 | 18228 | 18314 | + | - |
| egr-mir-124b | MI0017786 | None | APAU02000030.1 | 412342 | 412411 | - | - |
| egr-mir-125 | MI0017787 | None | APAU02000012.1 | 1320788 | 1320869 | + | - |
| egr-mir-277a | MI0017791 | None | APAU02000001.1 | 2377325 | 2377403 | + | - |
| egr-mir-184 | MI0017793 | None | APAU02000032.1 | 644065 | 644146 | + | - |
| egr-mir-4989 | MI0017794 | None | APAU02000001.1 | 2377189 | 2377268 | + | - |
| egr-mir-3479b | MI0033522 | None | APAU02000015.1 | 733485 | 733553 | - | - |
| egr-mir-277b | MI0033524 | None | APAU02000012.1 | 779202 | 779267 | + | - |
| egr-mir-96 | MI0035040 | None | APAU02000054.1 | 418200 | 418297 | + | - |