Stem-loop egr-mir-4989

Accession

MI0017794

Description

Echinococcus granulosus egr-mir-4989 precursor miRNA

Literature search

2 open access papers mention egr-mir-4989
(10 sentences)

Sequence

acgcUGGGUAGUCGUUGCAUUUCCacacugcugcaagguagcagcugaaagagggugAAAAUGCACCAACUAUCUGAGAu
...(((((((((.(.(((((((.(((.(((((((......)))))......)).))).))))))).).))))))).))..

Structure

acg  -       C U       C   a  ------     aa 
   cU GGGUAGU G UGCAUUU Cac cu      gcugc  g
   || ||||||| | ||||||| ||| ||      |||||   
   GA UCUAUCA C ACGUAAA gug ga      cgacg  g
-uA  G       A C       A   g  gaaagu     au 

Annotation confidence Not enough data

Genome context

APAU02000001.1: 2377189-2377268 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from egr-mir-4989

Mature egr-miR-4989-3p

• Accession: MIMAT0020250
• Description: Echinococcus granulosus egr-miR-4989-3p mature miRNA
• Sequence: 58 - AAAAUGCACCAACUAUCUGAGA - 79
• Evidence: experimental ; cloned [1], Illumina [2]

Mature egr-miR-4989-5p

• Accession: MIMAT0037433
• Description: Echinococcus granulosus egr-miR-4989-5p mature miRNA
• Sequence: 5 - UGGGUAGUCGUUGCAUUUCC - 24
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21219906
   Identification of Echinococcus granulosus microRNAs and their expression in different life cycle stages and parasite genotypes
   "Cucher M, Prada L, Mourglia-Ettlin G, Dematteis S, Camicia F, Asurmendi S, Rosenzvit M"
   "Int J Parasitol (2011) 41:439-448


2. PubMed ID: 25656283
   microRNA profiling in the zoonotic parasite Echinococcus canadensis using a high-throughput approach
   Macchiaroli N, Cucher M, Zarowiecki M, Maldonado L, Kamenetzky L, Rosenzvit MC
   Parasit Vectors (2015) 8:83