Stem-loop egr-mir-10271

Accession

MI0033162

Description

Echinococcus granulosus egr-mir-10271 precursor miRNA

Sequence

CGUGGGGCUUGUGGUACUUCUGggugcgggugcagugcguguguuggcgcaGGGGUAAGCCAGUCCCUAUUUC
...((((((.((..((((((((.(((((.((((...)))).)))..)).)))))))).)).))))))......

Structure

---CGU      U  GG        g  --   g    a 
      GGGGCU GU  UACUUCUG gu  gcg gugc  
      |||||| ||  |||||||| ||  ||| |||| g
      CCCUGA CG  AUGGGGac cg  ugu ugcg  
CUUUAU      C  -A        g  gu   g    u 

Annotation confidence Not enough data

Genome context

APAU02000012.1: 8571-8643 [+]

Mature egr-miR-10271-5p

• Accession: MIMAT0041291
• Description: Echinococcus granulosus egr-miR-10271-5p mature miRNA
• Sequence: 1 - CGUGGGGCUUGUGGUACUUCUG - 22
• Evidence: experimental ; Illumina [1]

Mature egr-miR-10271-3p

• Accession: MIMAT0041292
• Description: Echinococcus granulosus egr-miR-10271-3p mature miRNA
• Sequence: 52 - GGGGUAAGCCAGUCCCUAUUUC - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25168356
   Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus
   Bai Y, Zhang Z, Jin L, Kang H, Zhu Y, Zhang L, Li X, Ma F, Zhao L, Shi B, Li J, McManus DP, Zhang W, Wang S
   BMC Genomics (2014) 15:736