Stem-loop egr-mir-307

Accession

MI0033184

Description

Echinococcus granulosus egr-mir-307 precursor miRNA

Literature search

2 open access papers mention egr-mir-307
(4 sentences)

Sequence

3866 reads, 446.0 reads per million, 12 experiments

uccUCAUCCCGUGGGUUGAGCGAUGccuuuguguucugcaccucuaugcgcaUCACAACCUACUUGAUUGAGGGGaau
((((((((..((((((((...((((((...((((...))))......).))))).))))))))..)).))))))....

Structure

----      -  CC        AGC     - ---uuu    u 
    uccUCA UC  GUGGGUUG   GAUGc c      gugu  
    |||||| ||  ||||||||   ||||| |      |||| c
    GGGAGU AG  CAUCCAAC   CUacg g      cacg  
uaaG      U  UU        --A     c uaucuc    u 

Annotation confidence Medium

Genome context

APAU02000021.1: 217703-217780 [+]

Mature egr-miR-307-5p

• Accession: MIMAT0041335
• Description: Echinococcus granulosus egr-miR-307-5p mature miRNA
• Sequence: 4 - UCAUCCCGUGGGUUGAGCGAUG - 25
• Evidence: experimental ; Illumina [1-2]

Mature egr-miR-307-3p

• Accession: MIMAT0041336
• Description: Echinococcus granulosus egr-miR-307-3p mature miRNA
• Sequence: 53 - UCACAACCUACUUGAUUGAGGGG - 75
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25656283
   microRNA profiling in the zoonotic parasite Echinococcus canadensis using a high-throughput approach
   Macchiaroli N, Cucher M, Zarowiecki M, Maldonado L, Kamenetzky L, Rosenzvit MC
   Parasit Vectors (2015) 8:83


2. PubMed ID: 25168356
   Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus
   Bai Y, Zhang Z, Jin L, Kang H, Zhu Y, Zhang L, Li X, Ma F, Zhao L, Shi B, Li J, McManus DP, Zhang W, Wang S
   BMC Genomics (2014) 15:736