Stem-loop egr-mir-10239

Accession

MI0033127

Description

Echinococcus granulosus egr-mir-10239 precursor miRNA

Sequence

caauuGUCCACGCAGCACAGCGGUCAcgaaugcugggCCGAUGAAUGCCACGUGGUCACguguu
....((.(((((..(((((.(((((.((.....))))))).))..)))..))))).))......

Structure

--caau  U     CA   --  G     A  a 
      uG CCACG  GCA  CA CGGUC cg a
      || |||||  |||  || ||||| || u
      AC GGUGC  CGU  GU GCCgg gu g
uugugC  U     AC   AA  A     -  c 

Annotation confidence Not enough data

Genome context

APAU02000065.1: 138163-138226 [-]

Mature egr-miR-10239-5p

• Accession: MIMAT0041221
• Description: Echinococcus granulosus egr-miR-10239-5p mature miRNA
• Sequence: 6 - GUCCACGCAGCACAGCGGUCA - 26
• Evidence: experimental ; Illumina [1]

Mature egr-miR-10239-3p

• Accession: MIMAT0041222
• Description: Echinococcus granulosus egr-miR-10239-3p mature miRNA
• Sequence: 38 - CCGAUGAAUGCCACGUGGUCAC - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25168356
   Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus
   Bai Y, Zhang Z, Jin L, Kang H, Zhu Y, Zhang L, Li X, Ma F, Zhao L, Shi B, Li J, McManus DP, Zhang W, Wang S
   BMC Genomics (2014) 15:736