Stem-loop egr-mir-10229b

Accession

MI0033116

Description

Echinococcus granulosus egr-mir-10229b precursor miRNA

Sequence

uagagUGGCGCUUGAUUUCAACGCUGAuagaaaacaccguacaucAGUGUUGAUGUCAGGUUGCUUCUuuacu
(((((.((((((((((.(((((((((((..............))))))))))).)))))).)))).)))))..

Structure

--     U    -      U           agaaaa 
  uagag GGCG CUUGAU UCAACGCUGAu      c
  ||||| |||| |||||| |||||||||||       
  auuUC UCGU GGACUG AGUUGUGAcua      a
uc     U    U      U           caugcc 

Annotation confidence Not enough data

Genome context

APAU02000041.1: 53709-53781 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from egr-mir-10229b

Mature egr-miR-10229b-5p

• Accession: MIMAT0041199
• Description: Echinococcus granulosus egr-miR-10229b-5p mature miRNA
• Sequence: 6 - UGGCGCUUGAUUUCAACGCUGA - 27
• Evidence: experimental ; Illumina [1]

Mature egr-miR-10229b-3p

• Accession: MIMAT0041200
• Description: Echinococcus granulosus egr-miR-10229b-3p mature miRNA
• Sequence: 46 - AGUGUUGAUGUCAGGUUGCUUCU - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25168356
   Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus
   Bai Y, Zhang Z, Jin L, Kang H, Zhu Y, Zhang L, Li X, Ma F, Zhao L, Shi B, Li J, McManus DP, Zhang W, Wang S
   BMC Genomics (2014) 15:736