Stem-loop egr-mir-10240

Accession

MI0033128

Description

Echinococcus granulosus egr-mir-10240 precursor miRNA

Sequence

caauuAAAGGUCAGGAUGGCGGAGUGaagggcggcacugacgcgucauucccacccuccCCUCCUCCCCUGCCCUUUUCccaca
.....(((((.((((..((.((((.(.((((.((...(((....)))...)).)))).).)))).)))))).))))).......

Structure

--caauu     U    AU  C    U a    c  cac   c 
       AAAGG CAGG  GG GGAG G aggg gg   uga g
       ||||| ||||  || |||| | |||| ||   |||  
       UUUCC GUCC  CC CCUC c uccc cc   acu c
acaccCU     C    --  U    C c    a  cuu   g 

Annotation confidence Not enough data

Genome context

APAU02000182.1: 97021-97104 [+]

Mature egr-miR-10240-5p

• Accession: MIMAT0041223
• Description: Echinococcus granulosus egr-miR-10240-5p mature miRNA
• Sequence: 6 - AAAGGUCAGGAUGGCGGAGUG - 26
• Evidence: experimental ; Illumina [1]

Mature egr-miR-10240-3p

• Accession: MIMAT0041224
• Description: Echinococcus granulosus egr-miR-10240-3p mature miRNA
• Sequence: 60 - CCUCCUCCCCUGCCCUUUUC - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25168356
   Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus
   Bai Y, Zhang Z, Jin L, Kang H, Zhu Y, Zhang L, Li X, Ma F, Zhao L, Shi B, Li J, McManus DP, Zhang W, Wang S
   BMC Genomics (2014) 15:736