Stem-loop egr-mir-10288

Accession

MI0033179

Description

Echinococcus granulosus egr-mir-10288 precursor miRNA

Sequence

UGGUGUGGAGCUGUAGAAUAUGgccgggaacuccugcuaucagcaguauuuguucccucugUGAAAUGUCUGCCCCACAGCAUC
((.(((((.(..(((((...(.((.((((((..(((((...))))).....))))))...)).)....))))))))))).))..

Structure

--  G     A CU     -AUA G  --c      ---uc     a 
  UG UGUGG G  GUAGA    U gc   gggaac     cugcu  
  || ||||| |  |||||    | ||   ||||||     ||||| u
  AC ACACC C  CGUCU    A Ug   cccuug     gacga  
CU  G     - --     GUAA G  ucu      uuuau     c 

Annotation confidence Not enough data

Genome context

APAU02000017.1: 396344-396427 [-]

Mature egr-miR-10288-5p

• Accession: MIMAT0041325
• Description: Echinococcus granulosus egr-miR-10288-5p mature miRNA
• Sequence: 1 - UGGUGUGGAGCUGUAGAAUAUG - 22
• Evidence: experimental ; Illumina [1]

Mature egr-miR-10288-3p

• Accession: MIMAT0041326
• Description: Echinococcus granulosus egr-miR-10288-3p mature miRNA
• Sequence: 62 - UGAAAUGUCUGCCCCACAGCAUC - 84
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25168356
   Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus
   Bai Y, Zhang Z, Jin L, Kang H, Zhu Y, Zhang L, Li X, Ma F, Zhao L, Shi B, Li J, McManus DP, Zhang W, Wang S
   BMC Genomics (2014) 15:736