Stem-loop egr-mir-10275

Accession

MI0033166

Description

Echinococcus granulosus egr-mir-10275 precursor miRNA

Sequence

CGGACAGUGCACGGGUAUUUUgcuuugccugugcgucacgcgccgggggcaggggcagggcggcGGUGCCCACAUUGGACGAC
((..(((((...((((((((((((((((((.(((.((.((...)))).))).))))))))))).))))))).)))))..))..

Structure

--  GA     CAC       -           g   g  a  c 
  CG  CAGUG   GGGUAUU UUgcuuugccu ugc uc cg  
  ||  |||||   ||||||| ||||||||||| ||| || || g
  GC  GUUAC   CCCGUGG ggcgggacggg acg gg gc  
CA  AG     --A       c           g   g  -  c 

Annotation confidence Not enough data

Genome context

APAU02000007.1: 1097831-1097913 [+]

Mature egr-miR-10275-5p

• Accession: MIMAT0041299
• Description: Echinococcus granulosus egr-miR-10275-5p mature miRNA
• Sequence: 1 - CGGACAGUGCACGGGUAUUUU - 21
• Evidence: experimental ; Illumina [1]

Mature egr-miR-10275-3p

• Accession: MIMAT0041300
• Description: Echinococcus granulosus egr-miR-10275-3p mature miRNA
• Sequence: 65 - GGUGCCCACAUUGGACGAC - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25168356
   Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus
   Bai Y, Zhang Z, Jin L, Kang H, Zhu Y, Zhang L, Li X, Ma F, Zhao L, Shi B, Li J, McManus DP, Zhang W, Wang S
   BMC Genomics (2014) 15:736