Stem-loop egr-mir-10238

Accession

MI0033126

Description

Echinococcus granulosus egr-mir-10238 precursor miRNA

Sequence

74 reads, 7.0 reads per million, 6 experiments

acgauGACUGGGUUGCAGGAAAGCGUgaauaagugcuacauagagaacuuagucacGCAUACCCAAAGCCCAGUUCaucacc
..((((((((((((...((...((((((.(((((.((......)).))))).))))))...))...))))))).)))))...

Structure

-ac     -       GCA  AAA      a     g  ac 
   gauGA CUGGGUU   GG   GCGUga uaagu cu  a
   ||||| |||||||   ||   |||||| ||||| ||   
   cuaCU GACCCGA   CC   CGcacu auuca ga  u
cca     U       AAC  AUA      g     a  ga 

Annotation confidence High

Genome context

APAU02000026.1: 124155-124236 [-]

Mature egr-miR-10238-5p

• Accession: MIMAT0041219
• Description: Echinococcus granulosus egr-miR-10238-5p mature miRNA
• Sequence: 6 - GACUGGGUUGCAGGAAAGCGU - 26
• Evidence: experimental ; Illumina [1]

Mature egr-miR-10238-3p

• Accession: MIMAT0041220
• Description: Echinococcus granulosus egr-miR-10238-3p mature miRNA
• Sequence: 57 - GCAUACCCAAAGCCCAGUUC - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25168356
   Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus
   Bai Y, Zhang Z, Jin L, Kang H, Zhu Y, Zhang L, Li X, Ma F, Zhao L, Shi B, Li J, McManus DP, Zhang W, Wang S
   BMC Genomics (2014) 15:736