miRBase entry: egr-mir-10293

Stem-loop egr-mir-10293


Accession
MI0033185
Description
Echinococcus granulosus egr-mir-10293 precursor miRNA


Sequence

uccagGGGCUCGUUUACUCGAAUUGGUcugcguggggcacUAAUUCGAGUCAACAGGGUCGUUgcugc
..(((.((((((((.((((((((((((..((.....)))))))))))))).))).))))).)))....

Structure
--uc   G     -   U            cu  g 
    cag GGCUC GUU ACUCGAAUUGGU  gc u
    ||| ||||| ||| ||||||||||||  || g
    gUU CUGGG CAA UGAGCUUAAUca  cg g
cguc   G     A   C            --  g 


Annotation confidence Not enough data
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Genome context
APAU02000036.1: 266794-266861 [+]

Database links

Mature egr-miR-10293-5p

Accession MIMAT0041337
Description Echinococcus granulosus egr-miR-10293-5p mature miRNA
Sequence 6 - GGGCUCGUUUACUCGAAUUGGU - 27
Evidence experimental
Illumina [1-2]

Mature egr-miR-10293-3p

Accession MIMAT0041338
Description Echinococcus granulosus egr-miR-10293-3p mature miRNA
Sequence 41 - UAAUUCGAGUCAACAGGGUCGUU - 63
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 25656283
    microRNA profiling in the zoonotic parasite Echinococcus canadensis using a high-throughput approach
    Macchiaroli N, Cucher M, Zarowiecki M, Maldonado L, Kamenetzky L, Rosenzvit MC
    Parasit Vectors (2015) 8:83

  2. PubMed ID: 25168356
    Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus
    Bai Y, Zhang Z, Jin L, Kang H, Zhu Y, Zhang L, Li X, Ma F, Zhao L, Shi B, Li J, McManus DP, Zhang W, Wang S
    BMC Genomics (2014) 15:736