Stem-loop egr-mir-10227b

Accession

MI0033113

Description

Echinococcus granulosus egr-mir-10227b precursor miRNA

Sequence

gaaugUGGAGCUUGGUGACAAGACUGACagacaaguggcAGUGUUGCUAUCAAUGCUCCGCAuucgc
(((((((((((((((((.(((.((((.((......)).)))).))).)))))).)))))))))))..

Structure

--           -      A   G    A  ga 
  gaaugUGGAGC UUGGUG CAA ACUG Ca  c
  ||||||||||| |||||| ||| |||| ||   
  cuuACGCCUCG AACUAU GUU UGAc gu  a
cg           U      C   G    g  ga 

Annotation confidence Not enough data

Genome context

APAU02000041.1: 46139-46205 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from egr-mir-10227b

Mature egr-miR-10227b-5p

• Accession: MIMAT0041193
• Description: Echinococcus granulosus egr-miR-10227b-5p mature miRNA
• Sequence: 6 - UGGAGCUUGGUGACAAGACUGAC - 28
• Evidence: experimental ; Illumina [1]

Mature egr-miR-10227b-3p

• Accession: MIMAT0041194
• Description: Echinococcus granulosus egr-miR-10227b-3p mature miRNA
• Sequence: 40 - AGUGUUGCUAUCAAUGCUCCGCA - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25168356
   Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus
   Bai Y, Zhang Z, Jin L, Kang H, Zhu Y, Zhang L, Li X, Ma F, Zhao L, Shi B, Li J, McManus DP, Zhang W, Wang S
   BMC Genomics (2014) 15:736