Stem-loop egr-mir-10227c

Accession

MI0033117

Description

Echinococcus granulosus egr-mir-10227c precursor miRNA

Sequence

gaaugUGGCGCUUGACCAUGCUACUGAuagacgcaaaucAGUUGUAUCAUCAAUGCGCCGCAcucac
((.((((((((((((..((((.((((((........)))))).))))..)))).)))))))).))..

Structure

--  a        -    CC    U      aga 
  ga ugUGGCGC UUGA  AUGC ACUGAu   c
  || |||||||| ||||  |||| ||||||    
  cu ACGCCGCG AACU  UAUG UGAcua   g
ca  c        U    AC    U      aac 

Annotation confidence Not enough data

Genome context

APAU02000041.1: 46426-46492 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from egr-mir-10227c

Mature egr-miR-10227c-5p

• Accession: MIMAT0041201
• Description: Echinococcus granulosus egr-miR-10227c-5p mature miRNA
• Sequence: 6 - UGGCGCUUGACCAUGCUACUGA - 27
• Evidence: experimental ; Illumina [1]

Mature egr-miR-10227c-3p

• Accession: MIMAT0041202
• Description: Echinococcus granulosus egr-miR-10227c-3p mature miRNA
• Sequence: 40 - AGUUGUAUCAUCAAUGCGCCGCA - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25168356
   Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus
   Bai Y, Zhang Z, Jin L, Kang H, Zhu Y, Zhang L, Li X, Ma F, Zhao L, Shi B, Li J, McManus DP, Zhang W, Wang S
   BMC Genomics (2014) 15:736