Stem-loop egr-mir-2d

Accession

MI0033143

Description

Echinococcus granulosus egr-mir-2d precursor miRNA

Literature search

1 open access papers mention egr-mir-2d
(2 sentences)

Sequence

11521 reads, 1631.0 reads per million, 11 experiments

uCGUUCAUCAAUAUUGGCUGUGAcaucgcaacccgUGUCUACAGGCAAUGUUGACGAcgaacaa
(((((..(((((((((.(((((((((........))))).)))).))))))))).)))))....

Structure

----     CA         G    -     cgc 
    uCGUU  UCAAUAUUG CUGU GAcau   a
    |||||  ||||||||| |||| |||||    
    agcAG  AGUUGUAAC GACA CUGUg   a
aaca     -C         G    U     ccc 

Annotation confidence Medium

Genome context

APAU02000027.1: 925654-925717 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from egr-mir-2d

Mature egr-miR-2d-5p

• Accession: MIMAT0041253
• Description: Echinococcus granulosus egr-miR-2d-5p mature miRNA
• Sequence: 2 - CGUUCAUCAAUAUUGGCUGUGA - 23
• Evidence: experimental ; Illumina [1]

Mature egr-miR-2d-3p

• Accession: MIMAT0041254
• Description: Echinococcus granulosus egr-miR-2d-3p mature miRNA
• Sequence: 36 - UGUCUACAGGCAAUGUUGACGA - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25168356
   Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus
   Bai Y, Zhang Z, Jin L, Kang H, Zhu Y, Zhang L, Li X, Ma F, Zhao L, Shi B, Li J, McManus DP, Zhang W, Wang S
   BMC Genomics (2014) 15:736