Stem-loop egr-bantam

Accession

MI0033103

Description

Echinococcus granulosus egr-bantam precursor miRNA

Literature search

2 open access papers mention egr-bantam
(5 sentences)

Sequence

ugaagCGGCUUUUCUCGCGUUCUGAGAgcguuaauucuuuaguuaaacuaccgccuucUGAGAUCGCGAUUACAGCUGAUuccuu
.(((.(((((.(..(((((.(((.((((((((((((....)))))).....)))..))).))).)))))..).))))).)))...

Structure

--u   g     U UC     U   G   --   -----      c 
   gaa CGGCU U  UCGCG UCU AGA  gcg     uuaauu u
   ||| ||||| |  ||||| ||| |||  |||     ||||||  
   cuU GUCGA A  AGCGC AGA Ucu  cgc     aauuga u
uuc   A     C UU     U   G   uc   cauca      u 

Annotation confidence Not enough data

Genome context

APAU02000171.1: 120982-121066 [-]

Mature egr-bantam-5p

• Accession: MIMAT0041173
• Description: Echinococcus granulosus egr-bantam-5p mature miRNA
• Sequence: 6 - CGGCUUUUCUCGCGUUCUGAGA - 27
• Evidence: experimental ; Illumina [1-2]

Mature egr-bantam-3p

• Accession: MIMAT0041174
• Description: Echinococcus granulosus egr-bantam-3p mature miRNA
• Sequence: 59 - UGAGAUCGCGAUUACAGCUGAU - 80
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25656283
   microRNA profiling in the zoonotic parasite Echinococcus canadensis using a high-throughput approach
   Macchiaroli N, Cucher M, Zarowiecki M, Maldonado L, Kamenetzky L, Rosenzvit MC
   Parasit Vectors (2015) 8:83


2. PubMed ID: 25168356
   Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus
   Bai Y, Zhang Z, Jin L, Kang H, Zhu Y, Zhang L, Li X, Ma F, Zhao L, Shi B, Li J, McManus DP, Zhang W, Wang S
   BMC Genomics (2014) 15:736