Stem-loop egr-mir-10287

Accession

MI0033178

Description

Echinococcus granulosus egr-mir-10287 precursor miRNA

Sequence

AAGAAGACCAUAGACACGCACUgccacaggcguaccacauuucggugcgauagacaggugUGCGCGUAUGCGUUUUCAAGUGC
..((((((((((..(.((((((........((((((.......)))))).......)))))).)..)))).))))))......

Structure

----AA      -    GA A      gccacagg      ac 
      GAAGAC CAUA  C CGCACU        cguacc  a
      |||||| ||||  | ||||||        ||||||  u
      CUUUUG GUAU  G GUgugg        gcgugg  u
CGUGAA      C    GC C      -acagaua      cu 

Annotation confidence Not enough data

Genome context

APAU02000009.1: 1596898-1596980 [+]

Mature egr-miR-10287-5p

• Accession: MIMAT0041323
• Description: Echinococcus granulosus egr-miR-10287-5p mature miRNA
• Sequence: 1 - AAGAAGACCAUAGACACGCACU - 22
• Evidence: experimental ; Illumina [1]

Mature egr-miR-10287-3p

• Accession: MIMAT0041324
• Description: Echinococcus granulosus egr-miR-10287-3p mature miRNA
• Sequence: 61 - UGCGCGUAUGCGUUUUCAAGUGC - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25168356
   Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus
   Bai Y, Zhang Z, Jin L, Kang H, Zhu Y, Zhang L, Li X, Ma F, Zhao L, Shi B, Li J, McManus DP, Zhang W, Wang S
   BMC Genomics (2014) 15:736