Stem-loop egr-mir-281

Accession

MI0033110

Description

Echinococcus granulosus egr-mir-281 precursor miRNA

Literature search

3 open access papers mention egr-mir-281
(8 sentences)

Sequence

20020 reads, 2156.0 reads per million, 13 experiments

gggauAAGGAGGGCCCUUUAUGACCCUUgagaaauaaaucaaUGUCAUGGAGUUGCUCUCUAUAuccuc
((((((.(((((((.(((((((((..((((........)))).)))))))))..))))))).)))))).

Structure

-      A       -C         CC    gaa 
 gggauA GGAGGGC  CUUUAUGAC  UUga   a
 |||||| |||||||  |||||||||  ||||    
 uccuAU UCUCUCG  GAGGUACUG  aacu   u
c      A       UU         -U    aaa 

Annotation confidence High

Genome context

APAU02000006.1: 1258746-1258814 [-]

Mature egr-miR-281-5p

• Accession: MIMAT0041187
• Description: Echinococcus granulosus egr-miR-281-5p mature miRNA
• Sequence: 6 - AAGGAGGGCCCUUUAUGACCCUU - 28
• Evidence: experimental ; Illumina [1-2]

Mature egr-miR-281-3p

• Accession: MIMAT0041188
• Description: Echinococcus granulosus egr-miR-281-3p mature miRNA
• Sequence: 43 - UGUCAUGGAGUUGCUCUCUAUA - 64
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25656283
   microRNA profiling in the zoonotic parasite Echinococcus canadensis using a high-throughput approach
   Macchiaroli N, Cucher M, Zarowiecki M, Maldonado L, Kamenetzky L, Rosenzvit MC
   Parasit Vectors (2015) 8:83


2. PubMed ID: 25168356
   Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus
   Bai Y, Zhang Z, Jin L, Kang H, Zhu Y, Zhang L, Li X, Ma F, Zhao L, Shi B, Li J, McManus DP, Zhang W, Wang S
   BMC Genomics (2014) 15:736