Stem-loop egr-mir-36b

Accession

MI0033135

Description

Echinococcus granulosus egr-mir-36b precursor miRNA

Literature search

1 open access papers mention egr-mir-36b
(2 sentences)

Sequence

ucuagGAGUAAUUUCUAUCCGGUUGGuguuuuccagggaacacuaguguguccucuauguccaaggcaUCACCGGGUAGUUAUUACGCcucgg
.(.(((.(((((..(((((((((.((((((((.((((((.(((....)))))))...))...)))))))))))))))))..))))).))).).

Structure

u u   A     UU         U        --c  ---    a   u 
 c agG GUAAU  CUAUCCGGU GGuguuuu   ca   ggga cac a
 | ||| |||||  ||||||||| ||||||||   ||   |||| |||  
 g ucC CAUUA  GAUGGGCCA CUacggaa   gu   uccu gug g
g c   G     UU         -        ccu  auc    -   u 

Annotation confidence Not enough data

Genome context

APAU02000003.1: 597050-597142 [+]

Mature egr-miR-36b-5p

• Accession: MIMAT0041237
• Description: Echinococcus granulosus egr-miR-36b-5p mature miRNA
• Sequence: 6 - GAGUAAUUUCUAUCCGGUUGG - 26
• Evidence: experimental ; Illumina [1-2]

Mature egr-miR-36b-3p

• Accession: MIMAT0041238
• Description: Echinococcus granulosus egr-miR-36b-3p mature miRNA
• Sequence: 69 - UCACCGGGUAGUUAUUACGC - 88
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25656283
   microRNA profiling in the zoonotic parasite Echinococcus canadensis using a high-throughput approach
   Macchiaroli N, Cucher M, Zarowiecki M, Maldonado L, Kamenetzky L, Rosenzvit MC
   Parasit Vectors (2015) 8:83


2. PubMed ID: 25168356
   Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus
   Bai Y, Zhang Z, Jin L, Kang H, Zhu Y, Zhang L, Li X, Ma F, Zhao L, Shi B, Li J, McManus DP, Zhang W, Wang S
   BMC Genomics (2014) 15:736