Stem-loop egr-mir-3479a

Accession

MI0033108

Description

Echinococcus granulosus egr-mir-3479a precursor miRNA

Literature search

2 open access papers mention egr-mir-3479a
(9 sentences)

Sequence

cacaaCGGUGAAAGUUUAUGCAUUUAcaucgguugaugUAUUGCACGUUCUUUCGCCAUCuugca
......((((((((....((((..((((((....)))))).))))....))))))))........

Structure

--cacaaC        UUUA    UU      g 
        GGUGAAAG    UGCA  UAcauc g
        ||||||||    ||||  ||||||  
        CCGCUUUC    ACGU  AUguag u
acguuCUA        UUGC    -U      u 

Annotation confidence Not enough data

Genome context

APAU02000006.1: 1737369-1737433 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from egr-mir-3479a

Mature egr-miR-3479a-5p

• Accession: MIMAT0041183
• Description: Echinococcus granulosus egr-miR-3479a-5p mature miRNA
• Sequence: 6 - CGGUGAAAGUUUAUGCAUUUA - 26
• Evidence: experimental ; Illumina [1-2]

Mature egr-miR-3479a-3p

• Accession: MIMAT0041184
• Description: Echinococcus granulosus egr-miR-3479a-3p mature miRNA
• Sequence: 39 - UAUUGCACGUUCUUUCGCCAUC - 60
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25656283
   microRNA profiling in the zoonotic parasite Echinococcus canadensis using a high-throughput approach
   Macchiaroli N, Cucher M, Zarowiecki M, Maldonado L, Kamenetzky L, Rosenzvit MC
   Parasit Vectors (2015) 8:83


2. PubMed ID: 25168356
   Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus
   Bai Y, Zhang Z, Jin L, Kang H, Zhu Y, Zhang L, Li X, Ma F, Zhao L, Shi B, Li J, McManus DP, Zhang W, Wang S
   BMC Genomics (2014) 15:736