Stem-loop egr-mir-133

Accession

MI0033114

Description

Echinococcus granulosus egr-mir-133 precursor miRNA

Literature search

1 open access papers mention egr-mir-133
(1 sentences)

Sequence

caagaGGCUGAUUUGUGGGGCUCAGAAaagcuguaaaugaaaacuuUUGGUCCCCAUUAACCAGCCGCcugca
..((.(((((.((.((((((.((((((.................)))))).)))))).)).)))))..))...

Structure

-ca  -a     A  U      C      aagcugu 
   ag  GGCUG UU GUGGGG UCAGAA       a
   ||  ||||| || |||||| ||||||       a
   uc  CCGAC AA UACCCC GGUUuu       a
acg  CG     C  U      U      caaaagu 

Annotation confidence Not enough data

Genome context

APAU02000107.1: 129469-129541 [+]

Mature egr-miR-133-5p

• Accession: MIMAT0041195
• Description: Echinococcus granulosus egr-miR-133-5p mature miRNA
• Sequence: 6 - GGCUGAUUUGUGGGGCUCAGAA - 27
• Evidence: experimental ; Illumina [1-2]

Mature egr-miR-133-3p

• Accession: MIMAT0041196
• Description: Echinococcus granulosus egr-miR-133-3p mature miRNA
• Sequence: 47 - UUGGUCCCCAUUAACCAGCCGC - 68
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25656283
   microRNA profiling in the zoonotic parasite Echinococcus canadensis using a high-throughput approach
   Macchiaroli N, Cucher M, Zarowiecki M, Maldonado L, Kamenetzky L, Rosenzvit MC
   Parasit Vectors (2015) 8:83


2. PubMed ID: 25168356
   Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus
   Bai Y, Zhang Z, Jin L, Kang H, Zhu Y, Zhang L, Li X, Ma F, Zhao L, Shi B, Li J, McManus DP, Zhang W, Wang S
   BMC Genomics (2014) 15:736