Stem-loop egr-mir-10a

Accession

MI0017782

Description

Echinococcus granulosus egr-mir-10a precursor miRNA

Literature search

7 open access papers mention egr-mir-10a
(14 sentences)

Sequence

122760 reads, 10969.0 reads per million, 13 experiments

CACCCUGUAGACCCGAGUUUGagugccuagcguacguuccaccguacggacucccAAGCUCGUGUCUUCAAGGCAUCa
..((.((.((((.(((((((((((.((....(((((......)))))))))))..))))))).)))).)).)).....

Structure

---CA  C  U    C       --    g  uagc     uu 
     CC UG AGAC CGAGUUU  Gagu cc    guacg  c
     || || |||| |||||||  |||| ||    |||||   
     GG AC UCUG GCUCGAA  cuca gg    caugc  c
aCUAC  A  U    U       cc    -  ----     ca 

Annotation confidence High

Genome context

APAU02000001.1: 92728-92805 [+]

Mature egr-miR-10a-5p

• Accession: MIMAT0020236
• Description: Echinococcus granulosus egr-miR-10a-5p mature miRNA
• Sequence: 1 - CACCCUGUAGACCCGAGUUUG - 21
• Evidence: experimental ; cloned [1], Illumina [2]

Mature egr-miR-10a-3p

• Accession: MIMAT0037424
• Description: Echinococcus granulosus egr-miR-10a-3p mature miRNA
• Sequence: 56 - AAGCUCGUGUCUUCAAGGCAUC - 77
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21219906
   Identification of Echinococcus granulosus microRNAs and their expression in different life cycle stages and parasite genotypes
   "Cucher M, Prada L, Mourglia-Ettlin G, Dematteis S, Camicia F, Asurmendi S, Rosenzvit M"
   "Int J Parasitol (2011) 41:439-448


2. PubMed ID: 25656283
   microRNA profiling in the zoonotic parasite Echinococcus canadensis using a high-throughput approach
   Macchiaroli N, Cucher M, Zarowiecki M, Maldonado L, Kamenetzky L, Rosenzvit MC
   Parasit Vectors (2015) 8:83