Stem-loop egr-mir-10233

Accession

MI0033121

Description

Echinococcus granulosus egr-mir-10233 precursor miRNA

Sequence

67 reads, 14.0 reads per million, 7 experiments

uauugUUGCACAGCUUAGAGCUCUGUCugcuuuucgccugcggagugucgGUGCUGUGCGAAAGUGAUAAACU
((((.(((((((((...(((((((((..((.....))..))))))).))...))))))))).)))).......

Structure

-------    g         UUA  -       Cu  u 
       uauu UUGCACAGC   GA GCUCUGU  gc u
       |||| |||||||||   || |||||||  || u
       GUGA AGCGUGUCG   cu ugaggcg  cg u
UCAAAUA    A         UGg  g       uc  c 

Annotation confidence Not enough data

Genome context

APAU02000032.1: 665609-665681 [-]

Mature egr-miR-10233-5p

• Accession: MIMAT0041209
• Description: Echinococcus granulosus egr-miR-10233-5p mature miRNA
• Sequence: 6 - UUGCACAGCUUAGAGCUCUGUC - 27
• Evidence: experimental ; Illumina [1]

Mature egr-miR-10233-3p

• Accession: MIMAT0041210
• Description: Echinococcus granulosus egr-miR-10233-3p mature miRNA
• Sequence: 51 - GUGCUGUGCGAAAGUGAUAAACU - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25168356
   Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus
   Bai Y, Zhang Z, Jin L, Kang H, Zhu Y, Zhang L, Li X, Ma F, Zhao L, Shi B, Li J, McManus DP, Zhang W, Wang S
   BMC Genomics (2014) 15:736