Stem-loop egr-mir-10261

Accession

MI0033152

Description

Echinococcus granulosus egr-mir-10261 precursor miRNA

Sequence

aguggCCUCUCUAUCCCUUUUCACGUUAguauuguaugcucuaccaguaugcugugacuauACGGAUUUUGGCGGAGUUGGGGAGGCAcagca
.(((.(((((((((((((..((.(((((((...(((((((.....)))))))....)))).)))))....)).)))..)))))))))))....

Structure

---a   g        --   -  --UU  A   -    -auu       c 
    gug CCUCUCUA  UCC CU    UC CGU UAgu    guaugcu u
    ||| ||||||||  ||| ||    || ||| ||||    ||||||| a
    cAC GGAGGGGU  AGG GG    AG GCA auca    cguauga c
acga   -        UG   C  UUUU  -   u    gugu       c 

Annotation confidence Not enough data

Genome context

APAU02000003.1: 1901528-1901620 [+]

Mature egr-miR-10261-5p

• Accession: MIMAT0041271
• Description: Echinococcus granulosus egr-miR-10261-5p mature miRNA
• Sequence: 6 - CCUCUCUAUCCCUUUUCACGUUA - 28
• Evidence: experimental ; Illumina [1]

Mature egr-miR-10261-3p

• Accession: MIMAT0041272
• Description: Echinococcus granulosus egr-miR-10261-3p mature miRNA
• Sequence: 62 - ACGGAUUUUGGCGGAGUUGGGGAGGCA - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25168356
   Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus
   Bai Y, Zhang Z, Jin L, Kang H, Zhu Y, Zhang L, Li X, Ma F, Zhao L, Shi B, Li J, McManus DP, Zhang W, Wang S
   BMC Genomics (2014) 15:736