Stem-loop egr-mir-10279

Accession

MI0033170

Description

Echinococcus granulosus egr-mir-10279 precursor miRNA

Sequence

ACGUUCGCGCACGUCCAGCGGagauccugccaucacgguguuaggacucuUCUGACAUGCAUGAACGAGU
.((((((.(((.(((.((.((((.(((((.(((....))).))))))))).))))).))).))))))...

Structure

--A      C   C   C  C    a     c   c 
   CGUUCG GCA GUC AG GGag uccug cau a
   |||||| ||| ||| || |||| ||||| |||  
   GCAAGU CGU CAG UC ucuc aggau gug c
UGA      A   A   -  U    -     u   g 

Annotation confidence Not enough data

Genome context

APAU02000004.1: 878205-878274 [-]

Mature egr-miR-10279-5p

• Accession: MIMAT0041307
• Description: Echinococcus granulosus egr-miR-10279-5p mature miRNA
• Sequence: 1 - ACGUUCGCGCACGUCCAGCGG - 21
• Evidence: experimental ; Illumina [1]

Mature egr-miR-10279-3p

• Accession: MIMAT0041308
• Description: Echinococcus granulosus egr-miR-10279-3p mature miRNA
• Sequence: 51 - UCUGACAUGCAUGAACGAGU - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25168356
   Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus
   Bai Y, Zhang Z, Jin L, Kang H, Zhu Y, Zhang L, Li X, Ma F, Zhao L, Shi B, Li J, McManus DP, Zhang W, Wang S
   BMC Genomics (2014) 15:736