Stem-loop egr-mir-277a

Accession

MI0017791

Description

Echinococcus granulosus egr-mir-277a precursor miRNA

Literature search

3 open access papers mention egr-mir-277a
(15 sentences)

Sequence

1131808 reads, 102681.0 reads per million, 13 experiments

ggguagaaagugccuuuuacaacaugcugcCUCUAUGAGAUCCACUUAUGUUUGUAAAUGCAUUUUCUGGCCCGUAAcc
(((((((((((((..(((((((((((.((..(((...)))..))..)))).))))))).))))))))).))))......

Structure

------    -         cu       -    -c  cC   A 
      gggu agaaagugc  uuuacaa caug  ug  UCU  
      |||| |||||||||  ||||||| ||||  ||  ||| U
      CCCG UCUUUUACG  AAAUGUU GUAU  AC  AGA  
ccAAUG    G         -U       U    UC  CU   G 

Annotation confidence Low

Genome context

APAU02000001.1: 2377325-2377403 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from egr-mir-277a

Mature egr-miR-277a-5p

• Accession: MIMAT0057836
• Description: Echinococcus granulosus egr-miR-277a-5p mature miRNA
• Sequence: 31 - CUCUAUGAGAUCCACUUAUGUUUG - 54
• Evidence: experimental ; cloned [1], Illumina [2]

Mature egr-miR-277a-3p

• Accession: MIMAT0020247
• Description: Echinococcus granulosus egr-miR-277a-3p mature miRNA
• Sequence: 55 - UAAAUGCAUUUUCUGGCCCGUAA - 77
• Evidence: experimental ; cloned [1], Illumina [2]

References

1. PubMed ID: 21219906
   Identification of Echinococcus granulosus microRNAs and their expression in different life cycle stages and parasite genotypes
   "Cucher M, Prada L, Mourglia-Ettlin G, Dematteis S, Camicia F, Asurmendi S, Rosenzvit M"
   "Int J Parasitol (2011) 41:439-448


2. PubMed ID: 25656283
   microRNA profiling in the zoonotic parasite Echinococcus canadensis using a high-throughput approach
   Macchiaroli N, Cucher M, Zarowiecki M, Maldonado L, Kamenetzky L, Rosenzvit MC
   Parasit Vectors (2015) 8:83