Stem-loop egr-mir-10243

Accession

MI0033132

Description

Echinococcus granulosus egr-mir-10243 precursor miRNA

Sequence

agaggUAGAGCUUGACGUGUUGGAGACgcggcuacucguggaugcuccagagaggaugaaguCACCAAUACGUUGCCAGCUCCAUCacguu
...(((.(((((.((((((((((.(((....((.(((.((((...))))))).)).....))).))))))))))...))))).))).....

Structure

--aga   A     --U          A   -gcgg  a   g    u 
     ggU GAGCU   GACGUGUUGG GAC     cu cuc ugga  
     ||| |||||   |||||||||| |||     || ||| |||| g
     CUA CUCGA   UUGCAUAACC Cug     gg gag accu  
uugca   C     CCG          A   aagua  a   -    c 

Annotation confidence Not enough data

Genome context

APAU02000164.1: 27948-28038 [+]

Mature egr-miR-10243-5p

• Accession: MIMAT0041231
• Description: Echinococcus granulosus egr-miR-10243-5p mature miRNA
• Sequence: 6 - UAGAGCUUGACGUGUUGGAGAC - 27
• Evidence: experimental ; Illumina [1]

Mature egr-miR-10243-3p

• Accession: MIMAT0041232
• Description: Echinococcus granulosus egr-miR-10243-3p mature miRNA
• Sequence: 63 - CACCAAUACGUUGCCAGCUCCAUC - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25168356
   Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus
   Bai Y, Zhang Z, Jin L, Kang H, Zhu Y, Zhang L, Li X, Ma F, Zhao L, Shi B, Li J, McManus DP, Zhang W, Wang S
   BMC Genomics (2014) 15:736