Stem-loop egr-mir-10229a

Accession

MI0033111

Description

Echinococcus granulosus egr-mir-10229a precursor miRNA

Sequence

agaagUGGCGCUUGAUUUCAACACUGUuagaagcaacAGUGUUGAUACCAGGCAUUCACCucugu
(((.((((.(((((...(((((((((((......)))))))))))...)))))..)))).)))..

Structure

--   a    -C     AUU           ag 
  aga gUGG  GCUUG   UCAACACUGUu  a
  ||| ||||  |||||   |||||||||||   
  ucu CACU  CGGAC   AGUUGUGAcaa  a
ug   C    UA     CAU           cg 

Annotation confidence Not enough data

Genome context

APAU02000041.1: 53902-53966 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from egr-mir-10229a

Mature egr-miR-10229a-5p

• Accession: MIMAT0041189
• Description: Echinococcus granulosus egr-miR-10229a-5p mature miRNA
• Sequence: 6 - UGGCGCUUGAUUUCAACACUGU - 27
• Evidence: experimental ; Illumina [1]

Mature egr-miR-10229a-3p

• Accession: MIMAT0041190
• Description: Echinococcus granulosus egr-miR-10229a-3p mature miRNA
• Sequence: 38 - AGUGUUGAUACCAGGCAUUCACC - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25168356
   Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus
   Bai Y, Zhang Z, Jin L, Kang H, Zhu Y, Zhang L, Li X, Ma F, Zhao L, Shi B, Li J, McManus DP, Zhang W, Wang S
   BMC Genomics (2014) 15:736