Stem-loop egr-mir-96

Accession

MI0035040

Description

Echinococcus granulosus egr-mir-96 precursor miRNA

Literature search

6 open access papers mention egr-mir-96
(12 sentences)

Sequence

48943 reads, 3854.0 reads per million, 12 experiments

AUUGGCACUUUUGGAAUUGUCAccaguguuccccuugacucaacgcuggcgguggugccuuugcgggcuugcgguGACGGUCUAAAAGUGCCGAACac
.((((((((((((((.((((((((.(((..(((...........((.((((....))))...)))))..)))))))))))))))))))))))))....

Structure

---A              A        a   uu   cuugacucaac  --u    g 
    UUGGCACUUUUGGA UUGUCAcc gug  ccc           gc   ggcg u
    |||||||||||||| |||||||| |||  |||           ||   ||||  
    AGCCGUGAAAAUCU GGCAGugg cgu  ggg           cg   ccgu g
caCA              -        -   uc   -----------  uuu    g 

Annotation confidence High

Genome context

APAU02000054.1: 418200-418297 [+]

Mature egr-miR-96-5p

• Accession: MIMAT0043034
• Description: Echinococcus granulosus egr-miR-96-5p mature miRNA
• Sequence: 1 - AUUGGCACUUUUGGAAUUGUCA - 22
• Evidence: experimental ; Illumina [1]

Mature egr-miR-96-3p

• Accession: MIMAT0043035
• Description: Echinococcus granulosus egr-miR-96-3p mature miRNA
• Sequence: 76 - GACGGUCUAAAAGUGCCGAAC - 96
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25656283
   microRNA profiling in the zoonotic parasite Echinococcus canadensis using a high-throughput approach
   Macchiaroli N, Cucher M, Zarowiecki M, Maldonado L, Kamenetzky L, Rosenzvit MC
   Parasit Vectors (2015) 8:83