Stem-loop egr-mir-10290

Accession

MI0033181

Description

Echinococcus granulosus egr-mir-10290 precursor miRNA

Sequence

AGGUACUAGGGCUACUGGCAUGgccugaaggcuagcccacccggugugguacaauggccgAGCCAAAAGUGGUUCUUUACCUAA
(((((..((((((((((((.(((((.....((((..((....))..)))).....))))).)))...))))))))).)))))..

Structure

--     CU         ---   A     ugaag    gc  a 
  AGGUA  AGGGCUACU   GGC UGgcc     gcua  cc c
  |||||  |||||||||   ||| |||||     ||||  ||  
  UCCAU  UCUUGGUGA   CCG gccgg     uggu  gg c
AA     -U         AAA   A     uaaca    gu  c 

Annotation confidence Not enough data

Genome context

APAU02000020.1: 430704-430787 [-]

Mature egr-miR-10290-5p

• Accession: MIMAT0041329
• Description: Echinococcus granulosus egr-miR-10290-5p mature miRNA
• Sequence: 1 - AGGUACUAGGGCUACUGGCAUG - 22
• Evidence: experimental ; Illumina [1]

Mature egr-miR-10290-3p

• Accession: MIMAT0041330
• Description: Echinococcus granulosus egr-miR-10290-3p mature miRNA
• Sequence: 61 - AGCCAAAAGUGGUUCUUUACCUAA - 84
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25168356
   Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus
   Bai Y, Zhang Z, Jin L, Kang H, Zhu Y, Zhang L, Li X, Ma F, Zhao L, Shi B, Li J, McManus DP, Zhang W, Wang S
   BMC Genomics (2014) 15:736