Stem-loop egr-mir-31

Accession

MI0033105

Description

Echinococcus granulosus egr-mir-31 precursor miRNA

Literature search

9 open access papers mention egr-mir-31
(12 sentences)

Sequence

1889 reads, 148.0 reads per million, 11 experiments

gcuggUGGCAAGAUACUGGCGAAGCUGAggggucaaguaaucgucagCUUCGUCUGGUCUUGCUGCAcgcc
((..((((((((((...(((((((((((.((.........)).)))))))))))..))))))))))..)).

Structure

-  ug          ACU           g  guc 
 gc  gUGGCAAGAU   GGCGAAGCUGA gg   a
 ||  ||||||||||   ||||||||||| ||   a
 cg  CGUCGUUCUG   CUGCUUCgacu cu   g
c  cA          -GU           g  aau 

Annotation confidence Medium

Genome context

APAU02000211.1: 49499-49569 [-]

Mature egr-miR-31-5p

• Accession: MIMAT0041177
• Description: Echinococcus granulosus egr-miR-31-5p mature miRNA
• Sequence: 6 - UGGCAAGAUACUGGCGAAGCUGA - 28
• Evidence: experimental ; Illumina [1-2]

Mature egr-miR-31-3p

• Accession: MIMAT0041178
• Description: Echinococcus granulosus egr-miR-31-3p mature miRNA
• Sequence: 48 - CUUCGUCUGGUCUUGCUGCA - 67
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25656283
   microRNA profiling in the zoonotic parasite Echinococcus canadensis using a high-throughput approach
   Macchiaroli N, Cucher M, Zarowiecki M, Maldonado L, Kamenetzky L, Rosenzvit MC
   Parasit Vectors (2015) 8:83


2. PubMed ID: 25168356
   Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus
   Bai Y, Zhang Z, Jin L, Kang H, Zhu Y, Zhang L, Li X, Ma F, Zhao L, Shi B, Li J, McManus DP, Zhang W, Wang S
   BMC Genomics (2014) 15:736