Stem-loop egr-mir-10227a

Accession

MI0033106

Description

Echinococcus granulosus egr-mir-10227a precursor miRNA

Sequence

ggaugUGGCGCUUUCUAACUUUACUGAuagugauuuaucAGUAAAGUCAUAAAUGCACCUCAuuccc
(((((.((.(((((...(((((((((((((....)))))))))))))...))).)).)).)))))..

Structure

--     U  C  -   CUA             u 
  ggaug GG GC UUU   ACUUUACUGAuag g
  ||||| || || |||   |||||||||||||  
  cuuAC CC CG AAA   UGAAAUGAcuauu a
cc     U  A  U   UAC             u 

Annotation confidence Not enough data

Genome context

APAU02000041.1: 52250-52316 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from egr-mir-10227a

Mature egr-miR-10227a-5p

• Accession: MIMAT0041179
• Description: Echinococcus granulosus egr-miR-10227a-5p mature miRNA
• Sequence: 6 - UGGCGCUUUCUAACUUUACUGA - 27
• Evidence: experimental ; Illumina [1]

Mature egr-miR-10227a-3p

• Accession: MIMAT0041180
• Description: Echinococcus granulosus egr-miR-10227a-3p mature miRNA
• Sequence: 40 - AGUAAAGUCAUAAAUGCACCUCA - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25168356
   Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus
   Bai Y, Zhang Z, Jin L, Kang H, Zhu Y, Zhang L, Li X, Ma F, Zhao L, Shi B, Li J, McManus DP, Zhang W, Wang S
   BMC Genomics (2014) 15:736