Stem-loop egr-mir-10293

Accession

MI0033185

Description

Echinococcus granulosus egr-mir-10293 precursor miRNA

Sequence

uccagGGGCUCGUUUACUCGAAUUGGUcugcguggggcacUAAUUCGAGUCAACAGGGUCGUUgcugc
..(((.((((((((.((((((((((((..((.....)))))))))))))).))).))))).)))....

Structure

--uc   G     -   U            cu  g 
    cag GGCUC GUU ACUCGAAUUGGU  gc u
    ||| ||||| ||| ||||||||||||  || g
    gUU CUGGG CAA UGAGCUUAAUca  cg g
cguc   G     A   C            --  g 

Annotation confidence Not enough data

Genome context

APAU02000036.1: 266794-266861 [+]

Mature egr-miR-10293-5p

• Accession: MIMAT0041337
• Description: Echinococcus granulosus egr-miR-10293-5p mature miRNA
• Sequence: 6 - GGGCUCGUUUACUCGAAUUGGU - 27
• Evidence: experimental ; Illumina [1-2]

Mature egr-miR-10293-3p

• Accession: MIMAT0041338
• Description: Echinococcus granulosus egr-miR-10293-3p mature miRNA
• Sequence: 41 - UAAUUCGAGUCAACAGGGUCGUU - 63
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25656283
   microRNA profiling in the zoonotic parasite Echinococcus canadensis using a high-throughput approach
   Macchiaroli N, Cucher M, Zarowiecki M, Maldonado L, Kamenetzky L, Rosenzvit MC
   Parasit Vectors (2015) 8:83


2. PubMed ID: 25168356
   Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus
   Bai Y, Zhang Z, Jin L, Kang H, Zhu Y, Zhang L, Li X, Ma F, Zhao L, Shi B, Li J, McManus DP, Zhang W, Wang S
   BMC Genomics (2014) 15:736